PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G105200.1
Common NamePHAVU_005G105200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 408aa    MW: 45836.4 Da    PI: 6.3659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G105200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19211261256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Phvul.005G105200.1 211 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 261
                         59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.22E-33210270No hitNo description
Gene3DG3DSA:3.30.730.103.3E-32211269IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-23211269IPR016177DNA-binding domain
PROSITE profilePS5103222.998211268IPR001471AP2/ERF domain
SMARTSM003801.5E-40211274IPR001471AP2/ERF domain
PRINTSPR003676.7E-11212223IPR001471AP2/ERF domain
PfamPF008472.3E-12212261IPR001471AP2/ERF domain
PRINTSPR003676.7E-11234250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAAANTGKFD MGDETNNCSQ KGSEGKDWEV EKGKGMGSTT QRRQWKPVFD DTSISHNRPL  60
KKIRSPDRHN TNQSSSSSSS SAPFQPSPLS TPPSSSSRIV FPFAFNGSQH PMQFPHQFGA  120
TNSPFPHPSF QNQQQQMISF DSQQQNLPFP PIMARDSSLP HYHHHQQHPQ QLLQYWSDAL  180
HLSPRGMLTH LGPDGRPLFR PPTQPLNATK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT  240
FDTAEDAAMA YDREAFKLRG ENARLNFPEL FLNKDKNKQV EEEPSSPAQN QPELEPVPVG  300
RDMPREESNE NDSGIGSSDA TDEVHAAAAE GGEGVSQELV WGEMSAWFNA IPAAWGPGSP  360
VWDDLDSTNN LLYQSHVPFS NSNQQEINDA QRHEHNMGPG YLWKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20210268160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G105200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149866.10.0hypothetical protein PHAVU_005G105200g
TrEMBLV7BXT70.0V7BXT7_PHAVU; Uncharacterized protein
STRINGXP_007149866.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-60ERF family protein