PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G177600.1
Common NamePHAVU_004G177600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 1107aa    MW: 122271 Da    PI: 6.7714
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G177600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.3e-22131232199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Phvul.004G177600.1 131 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 218
                         99*****************************9545444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Phvul.004G177600.1 219 RDEKQQLLLGIRRA 232
                         5688889****997 PP

2Auxin_resp120.21.6e-39257340183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ k+++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Phvul.004G177600.1 257 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKSVYsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 340
                         79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-42121260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-40123246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-18130222No hitNo description
PfamPF023622.3E-20131232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843131233IPR003340B3 DNA binding domain
SMARTSM010199.1E-22131233IPR003340B3 DNA binding domain
PfamPF065072.8E-34257340IPR010525Auxin response factor
PROSITE profilePS5174527.1939941078IPR000270PB1 domain
PfamPF023094.4E-79941079IPR033389AUX/IAA domain
SuperFamilySSF542773.53E-610071072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MKTHPPQPEG GSAAPNPTQE KRSINPELWQ ACAGPLVNLP PSATHVIYFP QGHSEQVAAS  60
LKKDVDSQIP NYPNLPSKLL CLLHNLTLHA DPETDEVYAQ MTLQPVPSFD KDALLRSDLA  120
LKSTKPQPDF FCKQLTASDT STHGGFSVPR RAAEKIFPHL DYSMQPPAQE LVARDLHDNV  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPTNIS  240
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VIPLAKYYKS VYSHQPSLGM  300
RFRMMFETED SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE KRSRVSIWEI  360
EPVTAPFFLC PPPFFRSKRP RQPGMPDDEL SDFDNIFKRT MPWLGDDMCM KDPQGLPGLS  420
LAQWMNMQQN PALASSLQPN FAPSLSGSIL QNIPGADISR QLGFSAPQIS PSNNVAFNTQ  480
RLLQTAQQLD HLQKLPSTSS TLGTVLPPQQ QLGDITQQSR QNLANQTMPQ GQVQAQLLHP  540
QNIVQTNNIQ QQQPSIQNHQ MHRSLSQNPS QQQTIIGQSP IPDHLQQLQM SDNQIQLHLL  600
QKFQQQQQKQ THLAQQTVLQ QPTQLTQIQD QQRQILDKTH NLSRAVTPGQ VLEIPPLLKN  660
SLPEANSISN QITKANFQNN IQFPQQPKLQ QQQPGLLSEM SGHMALLPTH TTNQLSAAGS  720
SILNGAAGAG QSVITDDIPS CSTSPSTNNC ASALAPLINS RLQRNTIVGD DMAQSASTIL  780
SSSALETMSS NANLLKDLQP KCDVKPSLNI SKNQNQGHFG LQSYLNGSAA HTDCLDTSSS  840
TTSVCLSQSD AHMHQNNNPL AYNPHSMLFR DNSQDGEVQA DARGNIPYAN NMDSQMGMQL  900
NPDSLLTKGT LGLGKDLSNN FSSEGLLGNY ENNRDAQQEL SSSMVSQTFG VPDMAFNSID  960
STIDDSSFLN RGTWAPPPAP PPPPLPPTQF QRMRTYTKVY KRGAVGRSID ITRYSGYEEL  1020
KQDLARRFGI EGQLEDRQRI GWKLVYVDHE SDVLLVGDDP WEEFVNCVRC IKILSPQEVQ  1080
QMSLDGDFGN GGLPNQACSS SDGGNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642036147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152995.10.0hypothetical protein PHAVU_004G177600g
TrEMBLV7C4C00.0V7C4C0_PHAVU; Auxin response factor
STRINGGLYMA07G15640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19