PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G081200.1
Common NamePHAVU_004G081200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 318aa    MW: 36018.2 Da    PI: 5.546
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G081200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-172675255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr++  +g+WvAeI++ +   ++ r +lg++ taeeAa+a+++a+  l+g
  Phvul.004G081200.1 26 KYVGVRQRA-SGKWVAEIKETT---QKIRMWLGTYETAEEAARAYDEAACLLRG 75
                        8*****999.7*******9932...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-192683IPR016177DNA-binding domain
PROSITE profilePS5103219.3352683IPR001471AP2/ERF domain
SMARTSM003805.3E-352689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-272682IPR001471AP2/ERF domain
PfamPF008471.4E-122675IPR001471AP2/ERF domain
PRINTSPR003671.6E-72738IPR001471AP2/ERF domain
CDDcd000181.55E-302782No hitNo description
PRINTSPR003671.6E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEIQFQHPKQ HLRPKIKGKN NKSKNKYVGV RQRASGKWVA EIKETTQKIR MWLGTYETAE  60
EAARAYDEAA CLLRGSNTRT NFITRVSSDS PLASRIQKLL NNRKDIKEQE QDVENCATRV  120
NTNQQELNLA EGVTTLQDEK LRFESSLEEV SMFSVQPCLQ QDCRQKKIYV KDQKKKRVTS  180
TTRSASASAS SSTNTSNSDT CVNSLSSETT TQNTQLFDDA YRPDLSNFME SESGSQENPS  240
WGSEPFCDHF PFGQVMDLEN LPDIAGLELP EFERMKVERQ ISASLYAMNG VQEYMNTVQD  300
SNNEAIWNLT PLCSFLC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Involved in early stages of root nodule development. Functions redundantly with ERN1. Is essential with ERN1 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G081200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151856.10.0hypothetical protein PHAVU_004G081200g
SwissprotA9Y0K86e-85ERN2_MEDTR; Ethylene-responsive transcription factor ERN2
TrEMBLV7C3I20.0V7C3I2_PHAVU; Uncharacterized protein
STRINGXP_007151856.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1869946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Cerri MR, et al.
    The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection.
    Plant Physiol., 2016. 171(2): p. 1037-54
    [PMID:27208242]