PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G078200.1
Common NamePHAVU_004G078200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 412aa    MW: 46275.1 Da    PI: 6.9294
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G078200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.9e-334599155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+
  Phvul.004G078200.1 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 99
                        79****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.20142102IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-3143100IPR009057Homeodomain-like
SuperFamilySSF466899.85E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2345100IPR006447Myb domain, plants
PfamPF002493.7E-104798IPR001005SANT/Myb domain
PfamPF143791.3E-24142188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MYYQQQQQPR NMHALRMNSP TERHMIMQGG NGTGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKTVLKLM GIPGLTLYHL KSHLQKYRIS KNMHGQTNTG NNKIEATGRM  120
SEASGIQMKH LSIGLQTNKN SEINDALQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA  180
VLEKAQETLG RQNLGAEGVE AAKVQLSELA SRVSSQSLDT KFSELKELQG LWPHQTQEGQ  240
ATDCSMGSFL TYSEESQRNR ETHNMSLNLI AYNGPPFSVS KGCVEESVHL KPGLTLSEEV  300
KENMMFLSST SDSKVVKGDF LQERPSSLLS MNVGVLEEEK FGRTTLSKEE GWKVRDSTET  360
ERMAVKLNHE KISTDYRLAN FEVKLDLNSH DANDASSHCQ QFDLNGFSWN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2045101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-2044101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G078200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151824.10.0hypothetical protein PHAVU_004G078200g
SwissprotQ9SQQ91e-128PHL9_ARATH; Myb-related protein 2
TrEMBLV7C3730.0V7C373_PHAVU; Uncharacterized protein
STRINGXP_007151824.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-130G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]