PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G069900.1
Common NamePHAVU_004G069900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 249aa    MW: 26614.3 Da    PI: 8.9414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G069900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-204594255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++ a++k++g
  Phvul.004G069900.1 45 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDVAALKFKG 94
                        8********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-2444103No hitNo description
Gene3DG3DSA:3.30.730.104.3E-3344103IPR001471AP2/ERF domain
PfamPF008478.0E-144594IPR001471AP2/ERF domain
SMARTSM003801.8E-3745108IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2345103IPR016177DNA-binding domain
PROSITE profilePS5103225.46245102IPR001471AP2/ERF domain
PRINTSPR003671.0E-114657IPR001471AP2/ERF domain
PRINTSPR003671.0E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSSNQNTTFF PTPHGQITST SKFINSQDPS QATTNQGNAD IRKKHYRGVR QRPWGKWAAE  60
IRDPKKAARV WLGTFDTAEA AAMAYDVAAL KFKGNKAKLN FPERVAVPLP PPTNNTTSSA  120
SAQPSSLTPP HLGGHHQTLQ TSGSSSLVVS PTSEEAEGFP SLMEYARLLK CRDDDDFQRV  180
ALGLYQHHPN EELLYGSSQP PPVPFFLSSS SSSTFASSTS QGDVGGYGSS GFYSHGGTGF  240
DAGNTRGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2644105163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G069900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-114AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151718.10.0hypothetical protein PHAVU_004G069900g
SwissprotQ9FH544e-42EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLV7C0M50.0V7C0M5_PHAVU; Uncharacterized protein
STRINGXP_007151718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2013335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]