PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G068900.1
Common NamePHAVU_004G068900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 344aa    MW: 37981.9 Da    PI: 5.9051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G068900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1995144255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Phvul.004G068900.1  95 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 144
                         588******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-3495158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2995151IPR001471AP2/ERF domain
CDDcd000182.84E-3195151No hitNo description
PROSITE profilePS5103221.1495152IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-2195152IPR016177DNA-binding domain
PfamPF008474.4E-1296144IPR001471AP2/ERF domain
PRINTSPR003671.5E-896107IPR001471AP2/ERF domain
PRINTSPR003671.5E-8118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MFYLVDFPTP KQKLKKLEES LQTITNLACQ VPTSFISIVK FPFILHSSLQ QIVHFIHVKN  60
LSMSSYKSSP SSSKTKKKQT TTQDHQQHET VWGGRYLGVR RRPWGRYAAE IRDPSTKERH  120
WLGTFDTAEE AALAYDRAAR SMRGSRARTN FVYPDTPAGS SVTTILSPDE QTQTQIQIHQ  180
VQEDLSSLLN PNLFSQPDPN PPFSLGGYSG VTNTPTFSST EVVSSGGYNY NYGYTEGGSN  240
VEDSHSHSHF NLFDDGETQL PPLPPDITSS MAYETGHGFY GDGVGFSDPS FGLTDTGSGY  300
PFPGFESGDY VVHSPLFSAM PPVSDNVAME GFDLGNSSYF FRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2293151362ATERF1
3gcc_A9e-2293151362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G068900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151705.10.0hypothetical protein PHAVU_004G068900g
TrEMBLV7C0Q30.0V7C0Q3_PHAVU; Uncharacterized protein
STRINGXP_007151705.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-24ERF family protein