PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G061600.1
Common NamePHAVU_004G061600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 297aa    MW: 33780 Da    PI: 4.7317
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G061600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.9e-13951143
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        k i+n++ r++tf +R+ g++KK +ELS  C+ e ++i+f  +
  Phvul.004G061600.1  9 KHISNERSRKTTFLRRKRGLMKKISELSKKCGGEHCLIVFDDD 51
                        68*************************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-15177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.086152IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-10161IPR002100Transcription factor, MADS-box
CDDcd001205.05E-15252No hitNo description
PRINTSPR004042.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-141152IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRARITLKH ISNERSRKTT FLRRKRGLMK KISELSKKCG GEHCLIVFDD DNGDLGPMTS  60
PQNPVEIHSM IQKYYESQLK NGRPHKTYGI DEFLENRKNM IEVEISRVDK QISNIKYPTW  120
DPSMKNMEED QLRAFCAHVE AKIEACDKGI QLLKNKPLGF VPNMSQENTT ATTSHPNQVN  180
YLQSISQSEV LLDDFLNQLN DKNYGMADFS NTVDVPLNST NELSDLEFEE LIMGLSSCDW  240
PYQACDDPVG CSSEADEYVL PNICVEYPNE QQGGGDLHAL PPPLDVFQTN YYNMYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151610.10.0hypothetical protein PHAVU_004G061600g
TrEMBLV7C0D00.0V7C0D0_PHAVU; Uncharacterized protein
STRINGXP_007151610.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-17M-type_MADS family protein