PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G060900.1
Common NamePHAVU_004G060900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28223 Da    PI: 6.1667
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G060900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.9e-11951143
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        k i+n+  r++tf +R+ g++KK +E S  C+ e ++i+f  +
  Phvul.004G060900.1  9 KHISNEKFRKTTFLRRKRGLMKKISEFSNKCGGEHCLIVFDDD 51
                        689************************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-8161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.965152IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-15296IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-5323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-121152IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRARITLKH ISNEKFRKTT FLRRKRGLMK KISEFSNKCG GEHCLIVFDD DNGDVGPVTS  60
PQNPVQVHSM IQKYYSQIKN ERPHKTYGIE EFLENRKNMI ETEISRVDKH ISSIKYPTLD  120
PSIIIMEEDQ LRAFCAHVDA KIEACDRGIK LLKDQSQGFV PNMARENATA STSHPNQVNY  180
LQSISQSEAL LDDFFKQLND KNYGMVDFSS SVDVPLNSTN ELSDLEFEEL MMGLSSVDWP  240
YQAFCGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G060900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151603.10.0hypothetical protein PHAVU_004G060900g
TrEMBLV7C0920.0V7C092_PHAVU; Uncharacterized protein
STRINGXP_007151603.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-11M-type_MADS family protein