PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G031900.1
Common NamePHAVU_004G031900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 405aa    MW: 45460.3 Da    PI: 4.4415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G031900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194291255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Phvul.004G031900.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91
                        789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.55E-324198No hitNo description
SMARTSM003802.0E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103219.5594299IPR001471AP2/ERF domain
PfamPF008471.0E-134291IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-194299IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-274298IPR001471AP2/ERF domain
PRINTSPR003675.9E-84354IPR001471AP2/ERF domain
PRINTSPR003675.9E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MARKRKGGEV VEEREICEGS MAWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD  60
TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP CSQSSTSPAL SSKITNLLLQ  120
RLKERNNNNN CSSSSTSTSL LINHQHMQQE VDAYGDGSTQ FSIDQFTDFL NDPEDYSASN  180
NDFINNTAQI DYITSSFESC LTEKDGGTKV DVQYKTNIVT PQTSSNDSNS GVEDSEEEGT  240
DTNFDVHDFR FLDNIAPPSY YSPFEMAEEM EEPVEAENYG GDEPSMLRAV MKRMTYERKF  300
SASLYAFNGI PECLKLKLES GNMKGRGITD QLTSLQMACS KNRLKKNEEV KEYMEAMDGK  360
QEEHHQQTTT DMDSSSVDGE LLLWNSLDLP PICFVNLLEN GSFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-133598771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G031900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151265.10.0hypothetical protein PHAVU_004G031900g
TrEMBLV7BZF00.0V7BZF0_PHAVU; Uncharacterized protein
STRINGXP_007151265.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-22related to AP2 11