PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G292400.1
Common NamePHAVU_003G292400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 228aa    MW: 25001.1 Da    PI: 5.4495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G292400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.11.6e-2191141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  Phvul.003G292400.1  91 KKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDNAAIEFRG 141
                         59********.**********82....48************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-1592141IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2392150IPR016177DNA-binding domain
SMARTSM003806.1E-4092155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3392149IPR001471AP2/ERF domain
PROSITE profilePS5103225.50192149IPR001471AP2/ERF domain
PRINTSPR003672.8E-1293104IPR001471AP2/ERF domain
CDDcd000185.87E-3493151No hitNo description
PRINTSPR003672.8E-12115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSSSASFSAA TLTTEQELSV IVAALTNVVA GSTSSIPDFR LPSASQPPAA TAFDRMVPPP  60
SMDTCRECKI AGCLGCNFFP EEKKKQKRAK KKYRGVRQRP WGKWAAEIRD PRRAARVWLG  120
TFNTAEEAAR AYDNAAIEFR GPRAKLNFPV VDESLSMQQR ETETVAAAEQ LKNENPNQSM  180
EVNAVEFGNS NTEFWDRIGE ADFHQLMMMM DFAADSSDSA TGNTLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2391150464ATERF1
3gcc_A3e-2391150464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G292400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156515.11e-169hypothetical protein PHAVU_003G292400g
SwissprotQ9SZ069e-38EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLV7CEE01e-167V7CEE0_PHAVU; Uncharacterized protein
STRINGXP_007156515.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-34redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]