PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G273600.1
Common NamePHAVU_003G273600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 415aa    MW: 45250.3 Da    PI: 7.8613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G273600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-053961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C k Fs+   L  H+r H
  Phvul.003G273600.1 39 FTCHICEKGFSSGKALGGHMRIH 61
                        89*******************99 PP

2zf-C2H2224.3e-0793114223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +C+ CgksFs+  +L  H+r+H
  Phvul.003G273600.1  93 VCSVCGKSFSSLKSLFGHMRSH 114
                         6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-53761IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.87E-63764No hitNo description
PfamPF139122.0E-73961IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3443966IPR007087Zinc finger, C2H2
SMARTSM003550.00723961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.002592114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.42792119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-793114No hitNo description
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139124.3E-994115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-7257281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEENQEAQHR RENRGSVPGE GEGLGGNGGG VHDNGIRSFT CHICEKGFSS GKALGGHMRI  60
HNLSRKQVQK EKQGGGDVKS KAAKWVLVDG NPVCSVCGKS FSSLKSLFGH MRSHTEKAKR  120
GIQSVTPIVG ASSNSTSSST LSDDFAVDLC GVLRGWSVTA KRGRRSPSCS KSNSGLEDGD  180
EIEPRMQEAA YELMMLARGS PRWEQEVGAD PIQEHPCRKR GNEEELLQPV FGNSDDVKNK  240
KRNRKKVKLT ELASTEEGNR FSSCRKCNTT FQSHQSWKDH LCSLQNSKNI QPQSDGKEEH  300
HAKTNRKTGT ETVLEGSGLE ATKCEVLNKT FSTVEAIGEH KRSDWTSMAE AESAAQATSS  360
NVETGQNCSK VFSFDLNEIP AMDVEEGVQS DLFIPANILT SSSYVPHPKK NLCH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G273600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156283.10.0hypothetical protein PHAVU_003G273600g
TrEMBLV7CDL90.0V7CDL9_PHAVU; Uncharacterized protein
STRINGXP_007156283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.13e-14C2H2 family protein