PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G241700.1
Common NamePHAVU_003G241700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 127aa    MW: 13914.4 Da    PI: 9.6045
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G241700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-161963149
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                        ++ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a
  Phvul.003G241700.1 19 TRYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTA 63
                        68******99.**********9...336******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-101962IPR001471AP2/ERF domain
CDDcd000184.50E-181963No hitNo description
PROSITE profilePS5103218.0172063IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-222064IPR001471AP2/ERF domain
SMARTSM003803.1E-192093IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-152063IPR016177DNA-binding domain
PRINTSPR003672.5E-82132IPR001471AP2/ERF domain
PRINTSPR003672.5E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MEQGEGGSTR RRGKEGETTR YKGIRMRKWG KWVAEIREPN KRSRIWLGSY STPVAAARAY  60
DTAGSAPAAS DMSAASIRKR ATEVGARVDA LHRQHPHASA VGEFADRVDL NKTPEPENSD  120
CDWDGD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G241700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-81AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155903.13e-88hypothetical protein PHAVU_003G241700g
SwissprotQ9FH943e-36ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLV7CCH97e-87V7CCH9_PHAVU; Uncharacterized protein
STRINGXP_007155903.11e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.13e-32cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]