PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G236200.1
Common NamePHAVU_003G236200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 233aa    MW: 25507.2 Da    PI: 8.4321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G236200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.2e-312103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Phvul.003G236200.1   2 SCNGCRVLRKGCSESCVLRPCLqwietAEAQGHATVFVAKFFGRADLMSFVSNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 
                         6*********************9999777889*********************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l+
  Phvul.003G236200.1  93 VCQAAVETVLR 103
                         *****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8161107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR PCLQWIETAE AQGHATVFVA KFFGRADLMS FVSNVPENQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRTM PELMDLTSPA  120
AAADETSEVA CSDIWRIRHP NPTCGFTNSR SHNKVSSASK RKRLEEPAKL QAAPNLDLRL  180
TPIFLQKKVE NRRPVSPSMT SEESGTTTAC LESKFGDQWG HSGDRKVLNL FI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G236200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155842.11e-173hypothetical protein PHAVU_003G236200g
SwissprotQ9SZE84e-85LBD39_ARATH; LOB domain-containing protein 39
TrEMBLV7CG061e-171V7CG06_PHAVU; Uncharacterized protein
STRINGXP_007155842.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-87LOB domain-containing protein 39