PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G223600.1
Common NamePHAVU_003G223600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 206aa    MW: 22308.9 Da    PI: 4.5871
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G223600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-144794355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G r ++ +g+Wv+eIr+p++   +kr++lg++  ae+Aa+a++ a+++l+g
  Phvul.003G223600.1 47 YRGTR-CR-SGKWVSEIREPRK---TKRIWLGTYPAAEMAAAAYDVAALALKG 94
                        66665.55.6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.57246102IPR001471AP2/ERF domain
CDDcd000189.27E-1246104No hitNo description
SMARTSM003806.7E-2646108IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1747104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2447103IPR001471AP2/ERF domain
PfamPF008473.2E-85394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDDNPFPNVP LPPPPIQVPD NFFLSSSSSP TPTTSSPSPT PSTAFRYRGT RCRSGKWVSE  60
IREPRKTKRI WLGTYPAAEM AAAAYDVAAL ALKGPDTPLN FPNSILSYPI PASLSATDIR  120
AAAAAAAQAR IVRAPQESGQ AVNPHIGQEL ERREEYYDED ELLNMPNLLD EMARGMQVSP  180
PRISSFSSDD SPGNSDGDNL WSYTL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G223600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155698.11e-147hypothetical protein PHAVU_003G223600g
SwissprotQ9FJ906e-47ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLV7CBX91e-146V7CBX9_PHAVU; Uncharacterized protein
STRINGXP_007155698.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-24ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]