PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G180000.1
Common NamePHAVU_003G180000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 253aa    MW: 28553.8 Da    PI: 9.9263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G180000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64.1e-1591140255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++ GVr+++ +grW AeI++ s   ++ r +lg+f+ aeeAa a++ a++ l+g
  Phvul.003G180000.1  91 KFLGVRQRP-SGRWIAEIKESS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 140
                         789******.7******99932...36**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-3090149No hitNo description
SuperFamilySSF541715.56E-1991148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2791149IPR001471AP2/ERF domain
SMARTSM003808.4E-3291154IPR001471AP2/ERF domain
PROSITE profilePS5103219.63891148IPR001471AP2/ERF domain
PRINTSPR003677.4E-792103IPR001471AP2/ERF domain
PfamPF008475.8E-1092140IPR001471AP2/ERF domain
PRINTSPR003677.4E-7114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKKENESVTV TKKVFSVSRF LFNHSVLPND GEIYKDTLTL KMLFGFKYTS KLSHQSHNPN  60
KNLPLMPIEI DKSYEKRVMK IPKVGKKIEK KFLGVRQRPS GRWIAEIKES SQKLRLWLGT  120
FDKAEEAALA YDCAARLLRG RNAKTNFPNP GTMNTHEEDY SILGKNPRSY QLLRHAVMKN  180
HALSTSLYST FMPWKNQIMT RDEHDTLVEE TVVCSIPEQG SGCCGISFGS SKVYSSVVVA  240
PSFSASSHDE TP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G180000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155177.10.0hypothetical protein PHAVU_003G180000g
TrEMBLV7CE760.0V7CE76_PHAVU; Uncharacterized protein
STRINGXP_007155177.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-15related to AP2 11