PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G102500.1
Common NamePHAVU_003G102500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 351aa    MW: 38898.7 Da    PI: 5.7717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G102500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-174896355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Phvul.003G102500.1 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                        56******.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.58747104IPR001471AP2/ERF domain
CDDcd000181.97E-2847103No hitNo description
SMARTSM003807.3E-3347110IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2048105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2848104IPR001471AP2/ERF domain
PRINTSPR003671.3E-74859IPR001471AP2/ERF domain
PfamPF008473.2E-115096IPR001471AP2/ERF domain
PRINTSPR003671.3E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSTSRTSDTP FKGYDPTQTQ MCLSLLQRNT SPCGERRGRR KQAEPGRFLG VRRRPWGRYA  60
AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGSQAR TNFVYSDNIN FHTILSPADV  120
QVQVQVQPLL PPSQFLTNTT HTKQPNHQNT LPKVIHTSNG GNPSPLNNID VCVETTYGSA  180
QDDSYFFSSD SNSGYLECIV PDNCFRPASS STNSSNSRKS NVSDQKANAN SIESTNHHHY  240
SHVDMTSFSQ EGMEMAPMAS NFSDFWYPSE LSQGSWDDQQ SWDWNSSELS AIFKNPLRVE  300
NGCMDALYPI TDHSPSPSPS YGLMNEAASS TTCSPSLPPF GDVDLGYPLF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2038110578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G102500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154243.10.0hypothetical protein PHAVU_003G102500g
TrEMBLV7C7U90.0V7C7U9_PHAVU; Uncharacterized protein
STRINGXP_007154243.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-53ERF family protein