PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G064800.1
Common NamePHAVU_003G064800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 365aa    MW: 40165.7 Da    PI: 7.1374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G064800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174594255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Phvul.003G064800.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94
                        59*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08945102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2945101IPR001471AP2/ERF domain
SMARTSM003805.4E-3345108IPR001471AP2/ERF domain
PfamPF008479.1E-114594IPR001471AP2/ERF domain
CDDcd000184.57E-3045101No hitNo description
SuperFamilySSF541714.38E-2145102IPR016177DNA-binding domain
PRINTSPR003672.0E-94657IPR001471AP2/ERF domain
PRINTSPR003672.0E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEALRRLNG VTPSQEPDLV SDPHPKKCAA KRTLRDTANS GTAMRYRGVR RRPWGRYAAE  60
IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN FVYPDAADPH LFHPFNLPKH  120
CHVSRFPHNT NLGSDFPASS HHSASSSSSS LNMLLFRDFL NSSSNPCLLS SAPSQQFHNN  180
KSASCYVNSS SPSLSSSTAT NCLQGCCVGN ANSYNNAVSA NHGAEVAEVI DEDSDFFLRE  240
SSDSGLLEEI VHKFLPKSKP KVETSTVAQS FPESVPQPIF DHVVVSASKG YADSRMRVPK  300
VDGFGVCYDS PMQQFEALSG FNAMQGMSSI QRDNQFMMNH IAGFSGIEDY LQYPELFNSF  360
ATRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19451011471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G064800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153786.10.0hypothetical protein PHAVU_003G064800g
TrEMBLV7C9300.0V7C930_PHAVU; Uncharacterized protein
STRINGXP_007153786.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.12e-13ERF family protein