PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G315900.1
Common NamePHAVU_002G315900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 154aa    MW: 17335.6 Da    PI: 9.1284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G315900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-1675125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ kGVr ++ +g+++AeIr+p en   +r++lg+f+t++eA  a+ + r+++ +
  Phvul.002G315900.1  75 SKSKGVRLRP-WGKYAAEIRVPFEN---RRVWLGTFDTEKEASMAYNKKREEFDN 125
                         688*******.**********7664...**********99**********99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-975124IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1575128IPR016177DNA-binding domain
CDDcd000184.92E-1975117No hitNo description
PROSITE profilePS5103216.91176133IPR001471AP2/ERF domain
SMARTSM003806.6E-1376139IPR001471AP2/ERF domain
PRINTSPR003671.6E-77788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1878129IPR001471AP2/ERF domain
PRINTSPR003671.6E-799115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MQKCEMESLN EVCEERKLRI SFSDPDATDS EEESEVGKGE SKRNGSKRVV VEMKFPSMVE  60
EANKNAETKA EKGSSKSKGV RLRPWGKYAA EIRVPFENRR VWLGTFDTEK EASMAYNKKR  120
EEFDNKKALL KADASGHSKV AKMVFPHLPS QSS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G315900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160370.11e-108hypothetical protein PHAVU_002G315900g
SwissprotQ9M9B29e-18EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLV7CQH41e-107V7CQH4_PHAVU; Uncharacterized protein
STRINGXP_007160370.11e-108(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2657333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.15e-19ERF family protein