PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G282300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 433aa    MW: 47702.7 Da    PI: 7.6794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G282300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12278320754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  AveY+k+L
  Phvul.002G282300.1 278 MAERRRRKKLNDRLYMLRSIVPNiS------KMDRASILGDAVEYLKEL 320
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.872271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-16275341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9277320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-15277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-13278324No hitNo description
Gene3DG3DSA:4.10.280.101.3E-15278334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.83E-6355429No hitNo description
CDDcd048732.17E-7361421No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMSGWMQDTE EQNSASWSSP NANELSFFSL CAYKPIPEIH EEWHVPNNMA FSTNFADNML  60
LQQHQPLHTF SSSTNLDLSQ GLNSLTPKPS FYPLEHGFRA ASDVGLLDPQ PLNKVHHGGV  120
LFTSNGNNQL ALPNLATMCA MPPLQDGLGF SGFKNIGDSD HAEGSRKALL RPLESFPPSG  180
AQPTLFQKRA ALRKSLEHNL KGKSKGNSDS NKRKTCNNGE GVEWSGLNYD SDESDENKTM  240
EESGRYGGNS SNANSTTVNG GVDQKGKKKT GIPAKNLMAE RRRRKKLNDR LYMLRSIVPN  300
ISKMDRASIL GDAVEYLKEL LQRIGDLHNE LESTPHAGSS LTSSFLHPLT PNLPTRRGVK  360
IQMCCERKPG LLLSTMRALD NLGIDIHQAV ITYCNGFAMD IFRAQLRNEG QDVHPEQIKA  420
ILLDSAGFHS MN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266285KKKTGIPAKNLMAERRRRKK
2279286ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-132AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159968.10.0hypothetical protein PHAVU_002G2823000g, partial
SwissprotQ9LSE24e-86ICE1_ARATH; Transcription factor ICE1
TrEMBLV7CP270.0V7CP27_PHAVU; Uncharacterized protein (Fragment)
STRINGGLYMA05G38530.21e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-83bHLH family protein