PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G281300.1
Common NamePHAVU_002G281300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 227aa    MW: 25017 Da    PI: 10.6026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G281300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-2092141255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++++g
  Phvul.002G281300.1  92 QYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFPTAEAAALAYDEAALRFKG 141
                         69*******.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-3391150IPR001471AP2/ERF domain
SMARTSM003803.5E-3892155IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2292150IPR016177DNA-binding domain
CDDcd000182.50E-2092150No hitNo description
PfamPF008471.0E-1392141IPR001471AP2/ERF domain
PROSITE profilePS5103225.13292149IPR001471AP2/ERF domain
PRINTSPR003672.8E-1193104IPR001471AP2/ERF domain
PRINTSPR003672.8E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKRKVAKVDR KHGKRPLPLE EEEEEAEEKT FPFYFSQSKQ DISAVVSALV EVIGGKPQHK  60
DPTTTVSQSS AVENISNLPS HPPQHQGNAR RQYRGVRQRP WGKWAAEIRD PKKAARVWLG  120
TFPTAEAAAL AYDEAALRFK GTKAKLNFPE KVHRSGELGY LTNRPPSLQP SSTSFQLLPR  180
HTATNNDAIV SSSSSSSSST FSMKSAASSS EPPTKRTSDF DAKQKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2591157470ATERF1
3gcc_A1e-2591157470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G281300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-171AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159952.11e-165hypothetical protein PHAVU_002G281300g
SwissprotQ9FH542e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLV7CSP31e-164V7CSP3_PHAVU; Uncharacterized protein
STRINGXP_007159952.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]