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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G254500.1 | ||||||||
Common Name | PHAVU_002G254500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 319aa MW: 35548.7 Da PI: 5.3902 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 122 | 172 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr n r+r +lg+f+t eeAa a+++a+ kl+ge Phvul.002G254500.1 122 LYRGVRQRH-WGKWVAEIRLqK--N--RTRLWLGTFDTGEEAALAYDNAAFKLRGE 172 59******9.**********33..2..5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.062 | 122 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-36 | 122 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 122 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 122 | 180 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-32 | 123 | 181 | No hit | No description |
Pfam | PF00847 | 1.1E-14 | 123 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGTAIDMYNN TNIVPDFIDP YSEELMRALE PFMKTDYFSA SSNSASPSRQ SHPSSLISST 60 SYSSPNQIKL NQLTSDQILQ IQAQVGIQHH VGHSNQRQNQ AQMGPKRVPM KHGGAAAKAA 120 KLYRGVRQRH WGKWVAEIRL QKNRTRLWLG TFDTGEEAAL AYDNAAFKLR GEFARLNFPH 180 LRHQGAFVFG DFGDYKPLPS SVDSKLQAIC ESMGKQEQKK CCSVEDVKPE VHAAAELAPV 240 DSDVAQSNVC PELDNIKVEN MNETPMLSWP VSGESSSPES GFTFLDLSDF SYSNYEWDEI 300 ESFGLEKYPS VEIDWAAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 121 | 179 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G254500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX147642 | 0.0 | KX147642.1 Phaseolus vulgaris genotype BAT 477 DREB6B protein (DREB6B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159638.1 | 0.0 | hypothetical protein PHAVU_002G254500g | ||||
TrEMBL | V7CN51 | 0.0 | V7CN51_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159638.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-67 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G254500.1 |
Entrez Gene | 18639091 |