PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G254500.1
Common NamePHAVU_002G254500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 319aa    MW: 35548.7 Da    PI: 5.3902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G254500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19122172256
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr     n  r+r +lg+f+t eeAa a+++a+ kl+ge
  Phvul.002G254500.1 122 LYRGVRQRH-WGKWVAEIRLqK--N--RTRLWLGTFDTGEEAALAYDNAAFKLRGE 172
                         59******9.**********33..2..5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.062122179IPR001471AP2/ERF domain
SMARTSM003801.6E-36122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-30122180IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22122180IPR016177DNA-binding domain
CDDcd000181.02E-32123181No hitNo description
PfamPF008471.1E-14123172IPR001471AP2/ERF domain
PRINTSPR003671.0E-10123134IPR001471AP2/ERF domain
PRINTSPR003671.0E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGTAIDMYNN TNIVPDFIDP YSEELMRALE PFMKTDYFSA SSNSASPSRQ SHPSSLISST  60
SYSSPNQIKL NQLTSDQILQ IQAQVGIQHH VGHSNQRQNQ AQMGPKRVPM KHGGAAAKAA  120
KLYRGVRQRH WGKWVAEIRL QKNRTRLWLG TFDTGEEAAL AYDNAAFKLR GEFARLNFPH  180
LRHQGAFVFG DFGDYKPLPS SVDSKLQAIC ESMGKQEQKK CCSVEDVKPE VHAAAELAPV  240
DSDVAQSNVC PELDNIKVEN MNETPMLSWP VSGESSSPES GFTFLDLSDF SYSNYEWDEI  300
ESFGLEKYPS VEIDWAAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G254500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1476420.0KX147642.1 Phaseolus vulgaris genotype BAT 477 DREB6B protein (DREB6B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159638.10.0hypothetical protein PHAVU_002G254500g
TrEMBLV7CN510.0V7CN51_PHAVU; Uncharacterized protein
STRINGXP_007159638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-67ERF family protein