PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G237300.1
Common NamePHAVU_002G237300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 247aa    MW: 27875.3 Da    PI: 8.3028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G237300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.8e-172675255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr++  +g+W+AeI+d s   k+ r +lg++ taeeAa+a+++a+  l+g
  Phvul.002G237300.1 26 KFVGVRQRA-SGKWAAEIKDTS---KKIRMWLGTYQTAEEAARAYDEAACLLRG 75
                        799***999.7*********42...36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-112675IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-192684IPR016177DNA-binding domain
SMARTSM003802.7E-342689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-272684IPR001471AP2/ERF domain
PROSITE profilePS5103219.442683IPR001471AP2/ERF domain
CDDcd000184.56E-312682No hitNo description
PRINTSPR003674.9E-72738IPR001471AP2/ERF domain
PRINTSPR003674.9E-74965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGVEDQKQRA KDERLCEKVK MKNKRKFVGV RQRASGKWAA EIKDTSKKIR MWLGTYQTAE  60
EAARAYDEAA CLLRGSNTRT NFSTQSSTTI STNSPISLKL TNLLHRKAMS NQTQLQNHPS  120
AITPTFQGAT APNNIMVMEQ TSASSGQAQS LFVVQNQVSN NLYGLDMNMI DCAMGITQNA  180
SQLHFSWPLA QQRINELPLS KDGFNLEGQL SDSVYATNEY HHLEDTYEYK YEYDVNYPLS  240
HFFCFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1326821471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G237300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-180AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159432.10.0hypothetical protein PHAVU_002G237300g
SwissprotA9Y0K91e-96ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLV7CR640.0V7CR64_PHAVU; Uncharacterized protein
STRINGXP_007159432.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-24related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]