PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G163700.1
Common NamePHAVU_002G163700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 323aa    MW: 35266.7 Da    PI: 8.5452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G163700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18120170256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ rg+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Phvul.002G163700.1 120 LYRGVRQRH-RGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 170
                         59******9.8*********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-15119179No hitNo description
SMARTSM003802.5E-34120183IPR001471AP2/ERF domain
PROSITE profilePS5103222.379120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-29120178IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21120177IPR016177DNA-binding domain
PRINTSPR003673.1E-8121132IPR001471AP2/ERF domain
PfamPF008477.4E-13121170IPR001471AP2/ERF domain
PRINTSPR003673.1E-8143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGMQERNSE LGTDIGSSLS NLILTGGSNA LDSIFSNCCP PTNASSSNSV LDHLEPFGCS  60
GFEPLGSSVY LRQRDILQKF YQENRGNGSF LPTSLANPSM NSVYTSSLTS SLTNPCKKKL  120
YRGVRQRHRG KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE YARLNFPNLK  180
DPTKLGFGDS ARLNALKSSV DAKIQAICQK VKRERAKKIA AKKLSSATAH ATRKQSEKIN  240
SSASSSSSSL PLSPSSIFCD NWANELFSPS VSEDGIWKGE NSPASVSMEC PTMVTDDTEF  300
EGCSLARLPS FDPELIWEVL AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18119177160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-18117177263ATERF1
3gcc_A3e-18117177263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G163700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158572.10.0hypothetical protein PHAVU_002G163700g
SwissprotQ9C7W22e-69ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLV7CNR70.0V7CNR7_PHAVU; Uncharacterized protein
STRINGXP_007158572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-59ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]