PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G162500.1
Common NamePHAVU_002G162500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 314aa    MW: 35023.9 Da    PI: 5.4308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G162500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-20106156155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ kl+g
  Phvul.002G162500.1 106 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRG 156
                         59********.**********84....34*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.32E-33106163No hitNo description
PROSITE profilePS5103223.578107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-30107163IPR001471AP2/ERF domain
PfamPF008473.8E-13107156IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21107163IPR016177DNA-binding domain
SMARTSM003801.6E-36107170IPR001471AP2/ERF domain
PRINTSPR003673.8E-10108119IPR001471AP2/ERF domain
PRINTSPR003673.8E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTTPPTKYTH HTKLLTLSHH PPQNPYPRLV RITVTDADAT DSSSDEEQTF HSSKRLRQRH  60
RKFINEISIE PCAGNNNGVF SRKRVRSRSV VGKDRVAETP RASTVKKFRG VRQRPWGKWA  120
AEIRDPSRRV RLWLGTYDTA EEAALVYDNA AIKLRGPDAL TNFITPPATW HNEDPTPAPN  180
GYASAEETQN KTLFSPTSVL HSCSLSEEAE SIAGKDDDYS SVPESSKAKA ESLFPIPSEL  240
KFDFQDCLAA PEMFGELDSA AAAESVLFSD DDWPGVFLTA CEDLGLKSWH TDRNQEFFQD  300
IDDLFVSDPL LAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20106163462ATERF1
3gcc_A5e-20106163462ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G162500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158558.10.0hypothetical protein PHAVU_002G162500g
TrEMBLV7CK280.0V7CK28_PHAVU; Uncharacterized protein
STRINGXP_007158558.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-42cytokinin response factor 2