PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G154000.1
Common NamePHAVU_002G154000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 169aa    MW: 18512 Da    PI: 6.9727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G154000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.6e-15553255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r  ++  +Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Phvul.002G154000.1  5 LYRGIR--SRGRKWVSEIREPR----KaSRIWLGTFPTPEMAATAYDVAALALKG 53
                        69***7..44568*******94....36***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.04E-23463No hitNo description
PfamPF008473.3E-8453IPR001471AP2/ERF domain
SMARTSM003802.6E-25567IPR001471AP2/ERF domain
PROSITE profilePS5103218.65561IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16563IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-25562IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRHPLYRGIR SRGRKWVSEI REPRKASRIW LGTFPTPEMA ATAYDVAALA LKGDAAVLNL  60
PHSVTKYQIP ATNSPADIRT AASAAAAMMK SETEASHNIA SQTEATHTNY ASTWWFENNF  120
LDEEAIFGMP SLLVDMAGGM LLSPPRMSPP PSDNSPEKQA AETLWSYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-143621273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G154000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158457.11e-121hypothetical protein PHAVU_002G154000g
SwissprotQ9FJ908e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLV7CNF31e-120V7CNF3_PHAVU; Uncharacterized protein
STRINGXP_007158457.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-31ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]