PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G153900.1
Common NamePHAVU_002G153900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 217aa    MW: 24572.4 Da    PI: 4.8574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G153900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1856106155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  +++Wv+e r+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Phvul.002G153900.1  56 PVYRGVRRRN-NNKWVCEMRVPNN---NSRIWLGTYRTPEMAARAHDVAALALRG 106
                         68*****887.8*********944...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-1356106IPR001471AP2/ERF domain
SMARTSM003801.6E-2657120IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-2157116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-3057116IPR001471AP2/ERF domain
PROSITE profilePS5103220.98257114IPR001471AP2/ERF domain
CDDcd000189.16E-2858116No hitNo description
PRINTSPR003672.7E-75869IPR001471AP2/ERF domain
PRINTSPR003672.7E-78096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEIFTSTHDH DSEASCETGS PTRVQSSGCS DEEVILASSR PKKRAGRRVF KETRHPVYRG  60
VRRRNNNKWV CEMRVPNNNS RIWLGTYRTP EMAARAHDVA ALALRGKSAC LNFADSVWRL  120
TVPDTTDAEE IRRAAVEAAE AFVAEDVNQQ RRSEEIEEPL RLQQEEAMSE DEELHELLMR  180
IANEPLMSPP PCVRDGSGWN DVEIFDAEVS LWNFSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G153900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158456.11e-159hypothetical protein PHAVU_002G153900g
SwissprotQ9SGJ61e-59DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLV7CMG71e-158V7CMG7_PHAVU; Uncharacterized protein
STRINGXP_007158456.11e-159(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-43ERF family protein