PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G149500.1
Common NamePHAVU_002G149500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 401aa    MW: 44372 Da    PI: 6.8985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G149500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-174897255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Phvul.002G149500.1 48 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 97
                        59*******.**********93....35999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2948104IPR001471AP2/ERF domain
SMARTSM003801.7E-3348111IPR001471AP2/ERF domain
PfamPF008474.5E-114897IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2148105IPR016177DNA-binding domain
PROSITE profilePS5103222.11548105IPR001471AP2/ERF domain
CDDcd000186.28E-3048104No hitNo description
PRINTSPR003672.3E-94960IPR001471AP2/ERF domain
PRINTSPR003672.3E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEEAMRRLNG VAPILGSDPK ESAVGENPKR STAVNKRTLR EDGSGAMRYR GVRRRPWGRY  60
AAEIRDPQSK ERRWLGTFDT AEEAACAYDC AARAMRGLKA RTNFVYPTSP QASSATTEHF  120
FHSFNNNNFI KHSPSLPFTN HRSRHSTGSA MCFDHPSAVD FSYSNPRNPS STLNMLLLRD  180
LINSSSNNPS LLSSSTHNFH DQFYNKGAST FSSLPTVSSS SSSPLFPSYS VNYPFEGSSS  240
VNVNTLCGTN FTEKGDDDDS GSGFFSRESS DSGLLEEIVN KFLPKTKPSK CESLPKMEVF  300
RNPQESLLPS LISESTLVST VQCSDDTKKG FQKNESFGVS FDHQGFPMQK FDSFNGFDSV  360
QGMALGNEHT MANHAENCIV EDVFQYQELL NSFAIRMQNA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1940104671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G149500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158394.10.0hypothetical protein PHAVU_002G149500g
TrEMBLV7CLZ50.0V7CLZ5_PHAVU; Uncharacterized protein
STRINGXP_007158394.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.14e-14ERF family protein