PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G137300.1
Common NamePHAVU_002G137300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 374aa    MW: 41661.4 Da    PI: 9.3222
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G137300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.4e-32193246255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Phvul.002G137300.1 193 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 246
                         9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15190246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28191246IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-24193246IPR006447Myb domain, plants
PfamPF002496.4E-7194245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNTK PTSSWRRSTE EDMDLGFWKR ALDSRNSISS MAKQDSCVAL  60
SLSNPKASDN SNSSNLIHHF QNVANNATTN PFQPFQQNHY FHQPLFQPQH QSLSQDLGFL  120
RPIRGIPVYQ NPPPIPFTQH HHHHHHLPLE PSTTTPSSII STTNTASTPF HSQALMRSRF  180
LSRFPAKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH  240
LQMYRTVKTT DRAAASSGQS DVYDNGSSGD TSDDLVFDVK SSTRSDVSIK QGRSSVNQDK  300
EYHGLWGNSS REAWLHGKTK TDSVGNVPSL EKEMDPKCLS YERISDGSSS SNVSGSSQKK  360
PNLDLEFSLG QPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-17194248458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G137300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158256.10.0hypothetical protein PHAVU_002G137300g
SwissprotQ9C6162e-94KAN2_ARATH; Probable transcription factor KAN2
TrEMBLV7CLW80.0V7CLW8_PHAVU; Uncharacterized protein
STRINGXP_007158256.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-75G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]