PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G132500.1
Common NamePHAVU_002G132500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 270aa    MW: 30403 Da    PI: 7.7488
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G132500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.94.5e-332175155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        kprlrWt++LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl
  Phvul.002G132500.1 21 KPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-321876IPR009057Homeodomain-like
PROSITE profilePS5129412.1631878IPR017930Myb domain
SuperFamilySSF466892.69E-162178IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-242176IPR006447Myb domain, plants
PfamPF002496.5E-92374IPR001005SANT/Myb domain
PfamPF143794.4E-23119165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGGGRESYN GVVMTMTRDP KPRLRWTTDL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG  60
LTLYHLKSHL QKYRLGQQAR KQNEELNKEN SRCSFVNFSN RSSGPNTSYR GDNEGGEIPI  120
AEALRHQIEV QKRLEDQLEV QKKLQMRIEA QGKYLQAVLE KAQRTLSLDG SGSLEASRAQ  180
LTEFNSALSN FMENMNKDSK ENIIEVTDFY NKNHGSDFHY EEVGREQNRD QKPKIEGGSI  240
EFDLNIKGSN DLVSAGGAEM DVNMISYRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-182174154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182174154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182174154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182174154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G132500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-180AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158199.10.0hypothetical protein PHAVU_002G132500g
SwissprotC0SVS49e-83PHLB_ARATH; Myb family transcription factor PHL11
TrEMBLV7CLJ10.0V7CLJ1_PHAVU; Uncharacterized protein
STRINGXP_007158199.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51013142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.13e-84G2-like family protein
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]