PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G035900.1
Common NamePHAVU_002G035900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 183aa    MW: 20227.7 Da    PI: 6.0058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G035900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-181766255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +k +g+Wv+eIr+p   g ++r++lg+f t+e+Aa+a++ a++ ++g
  Phvul.002G035900.1 17 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 66
                        69****999.**********8...325***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-231675IPR016177DNA-binding domain
CDDcd000182.17E-231676No hitNo description
SMARTSM003809.1E-381780IPR001471AP2/ERF domain
PfamPF008477.0E-121766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-321775IPR001471AP2/ERF domain
PROSITE profilePS5103223.8811774IPR001471AP2/ERF domain
PRINTSPR003673.7E-101829IPR001471AP2/ERF domain
PRINTSPR003673.7E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEMPSSSSTH VGAASSAYRG VRKRKWGKWV SEIREPGTKT RIWLGSFETP EMAAAAYDVA  60
ALHFRGRDAR LNFPELASTL PRPVSNNADH IRMAAHEAAL RLRTNPAAAE TGGGSLTAPP  120
LTVRLSPTQI QAINDSPMDS PQTWMQMPDT FMMHDQSMMF ANGYAFEDNE WENMQSDSLW  180
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151374163ATERF1
3gcc_A1e-151374163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G035900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157007.11e-133hypothetical protein PHAVU_002G035900g
SwissprotQ9C9I22e-63ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLV7CJB31e-132V7CJB3_PHAVU; Uncharacterized protein
STRINGXP_007157007.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-64ERF family protein