PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G012200.1
Common NamePHAVU_002G012200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 238aa    MW: 25802.4 Da    PI: 7.6032
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G012200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.9e-312103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Phvul.002G012200.1   2 SCNGCRVLRKGCSDSCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l+
  Phvul.002G012200.1  93 VCQAAVETVLR 103
                         *****998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6651107IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-272101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDSCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPEAQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTVRPV PELLGLGAPT  120
PDDASEGEVT CNDKWRVRDP NPIFRLPGSM SDKAASGGKR KRLEELAKLQ TATTDLNLRL  180
TPSFLQANFG CRQEIRWPRS PSINSEESGT TTAACLESAI GDHYAPDGDR KVLNLFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G012200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156728.11e-176hypothetical protein PHAVU_002G012200g
SwissprotQ9SN232e-78LBD38_ARATH; LOB domain-containing protein 38
TrEMBLV7CEX21e-174V7CEX2_PHAVU; Uncharacterized protein
STRINGXP_007156728.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.18e-81LOB domain-containing protein 38