PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G251200.1
Common NamePHAVU_001G251200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 296aa    MW: 32793.7 Da    PI: 5.3963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G251200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20117167256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  Phvul.001G251200.1 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 167
                         59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.65E-35116173No hitNo description
Gene3DG3DSA:3.30.730.102.7E-32117175IPR001471AP2/ERF domain
SMARTSM003804.9E-39117180IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23117175IPR016177DNA-binding domain
PROSITE profilePS5103223.024117174IPR001471AP2/ERF domain
PRINTSPR003673.3E-11118129IPR001471AP2/ERF domain
PfamPF008473.0E-14118167IPR001471AP2/ERF domain
PRINTSPR003673.3E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MATVMDMYKN SSMMLSDFLD PCNDQELMKA LEPFMKSDSS TTSSITYPSL SFPSFSFSYE  60
SQKGLNQPSS IKLNQLTPSQ TFQIQAQIQV TRAQFLSPKP VPMKQVGGRV VSKPTKLYRG  120
VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAALAYDNA AFKLRGENAR LNFHHLRHHG  180
GSVYGAFGTY KPLPSAVDAK LQAICQSLAI NTHKEEETAT TSEFEDVKVG NQTASSPLSD  240
EYSSSSSSSC AGSSSPESDI TFLDFSDSYE AMDNLGLDLE KYPSVEIDWE ALSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22116173159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G251200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163638.10.0hypothetical protein PHAVU_001G251200g
SwissprotO656653e-77ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLV7CZQ40.0V7CZQ4_PHAVU; Uncharacterized protein
STRINGXP_007163638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-62ERF family protein