PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G157600.1
Common NamePHAVU_001G157600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 159aa    MW: 17846.5 Da    PI: 10.5019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G157600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-202069255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a++ a++ l+g
  Phvul.001G157600.1 20 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDTAARTLRG 69
                        69*******.**********883....5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.43E-282079No hitNo description
PfamPF008471.0E-122069IPR001471AP2/ERF domain
PROSITE profilePS5103222.5242077IPR001471AP2/ERF domain
SMARTSM003803.3E-352083IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-222078IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-302077IPR001471AP2/ERF domain
PRINTSPR003671.8E-102132IPR001471AP2/ERF domain
PRINTSPR003671.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MPAHALPIHK HSPPPPREVH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF DTAEEAARAY  60
DTAARTLRGP KAKTNFTYVV APPVLAAPES QAQAHDRLAR PVEFWGLPLF FTTEAASGAP  120
VRSEYKGYKL ENIAGFVVTK EEDKKPFLFD LNLPAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-192076562ATERF1
3gcc_A8e-192076562ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G157600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-176AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162505.11e-111hypothetical protein PHAVU_001G157600g
TrEMBLV7CWJ31e-110V7CWJ3_PHAVU; Uncharacterized protein
STRINGXP_007162505.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-22ERF domain protein 12