PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G119500.1
Common NamePHAVU_001G119500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 312aa    MW: 33920.8 Da    PI: 6.9162
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G119500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30108161155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Phvul.001G119500.1 108 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 161
                         59*******************.********************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-20105165IPR009057Homeodomain-like
PROSITE profilePS5129411.059105164IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-30107166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24109161IPR006447Myb domain, plants
PfamPF002491.2E-7111160IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKEEDSNWFS RWEEELPPPE DLMPLSQTLI TPDLAMAFDI RNPHTTNLNT AQQLQHQQQQ  60
QPPQQQQQQP SNPSSLPNPQ QPTSAEFADS GELGSGTAGE EPARTLKRPR LVWTPQLHKR  120
FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGIS AAGPGGPGGG  180
ASGAVADPAT DHLFASSPVP AHFLHPATRP NSDHFLPFVP VPALHHHQQQ QQQQMVAAAQ  240
YHRQVGHFGS PPNGHFENPF MSRPNLQRIG GGGGGPVHNH HSVSGYVEDM ESANAASGGR  300
KVLTLFPTGD D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-31108164157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G119500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162050.10.0hypothetical protein PHAVU_001G119500g
SwissprotO222104e-68MYBC1_ARATH; Transcription factor MYBC1
TrEMBLV7CV760.0V7CV76_PHAVU; Uncharacterized protein
STRINGXP_007162050.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-93G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]