PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G099700.1
Common NamePHAVU_001G099700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 232aa    MW: 25456.8 Da    PI: 5.0574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G099700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  Phvul.001G099700.1 29 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 78
                        588******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-282985IPR001471AP2/ERF domain
SMARTSM003807.3E-322992IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-212986IPR016177DNA-binding domain
CDDcd000182.08E-302985No hitNo description
PROSITE profilePS5103220.8372986IPR001471AP2/ERF domain
PfamPF008478.4E-123078IPR001471AP2/ERF domain
PRINTSPR003672.1E-83041IPR001471AP2/ERF domain
PRINTSPR003672.1E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MNPRTTSSSS KTKKKQTAPE PHQTAWGGRY LGVRRRPWGR YAAEIRDPST KERHWLGTFD  60
TADEAALAYD RAARAMRGSR ARTNFVYADT TPGSSLTPII SPDQQPLPQP DPVLTVDPFS  120
LLGFPSGSSS YDENASASVA ASHFSQQSFF ENNNNNNYYN NNNNDNEKSG STVELPPLPP  180
DITSSMGYEM EHQSGGFYWE ASPMFSAMST VSENVGAESQ VFELGISSYF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-193085359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-192785362ATERF1
3gcc_A2e-192785362ATERF1
5wx9_A7e-1928851371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G099700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161805.11e-171hypothetical protein PHAVU_001G099700g
TrEMBLV7CUK41e-170V7CUK4_PHAVU; Uncharacterized protein
STRINGXP_007161805.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.15e-25ERF family protein