PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G085500.1
Common NamePHAVU_001G085500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 428aa    MW: 46961.2 Da    PI: 5.2209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G085500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11241283754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Phvul.001G085500.1 241 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 283
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17237308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9240283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15241297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-13241287No hitNo description
CDDcd048734.06E-7356397No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MMEGYTLPAP PTEEDAPPPS WGRPNSQEED IAIALGAPLT FKSMLQQQPQ PQQPQLDSFF  60
NFNINSATSI PFVPSMESFP PLDPFSPSLP PPPFFNTNTN TLPFDPGFDM GLETGLHSSC  120
PPLFSQLQQG FKFGELEALT APGNVPFLDG AKGDNPLERV QPTLYRKRRG TAEIPGLETV  180
RRKGRKWEEG EGEEGSSADV DGSGLNYESD ENDNGNNGLK GSENGGDHKG KRKGLPAKNL  240
MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIDYL KELLQRINDL HNELEMTSAG  300
SSLPPSTSTS FQPLTPTLPT LPCRVKEELY PGALPSPKNQ AAKVEVRVRE GRAVNIHMFC  360
TRRPGLLLST MRALDNLGLD VQQAVISCFN GFALDVFKAE QCREGQDVLP EQIKAVLLDS  420
AGFHGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230248KRKGLPAKNLMAERRRRKK
2242249ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161631.10.0hypothetical protein PHAVU_001G085500g
SwissprotQ9LSE21e-117ICE1_ARATH; Transcription factor ICE1
TrEMBLV7CWH10.0V7CWH1_PHAVU; Uncharacterized protein
STRINGGLYMA16G05390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-103bHLH family protein