PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G046300.1
Common NamePHAVU_001G046300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 592aa    MW: 65435.3 Da    PI: 6.3292
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G046300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27204257155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++Wt +LH++Fv+av+qL G +kA+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl
  Phvul.001G046300.1 204 KARVVWTVDLHQKFVNAVDQL-GFDKAVPKKILDLMNVEKLTRENVASHLQKFRL 257
                         68*******************.********************************8 PP

2Response_reg78.71.9e-26211281108
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+ + +++l+++l++ +y +v+++++++ al+ll  +e+++Dl++ D++mp+mdG++ll+     e++lp+i+++ +++++++ + 
  Phvul.001G046300.1  21 VLAVDDDSTCLMILETMLRRCQY-HVTTTKNAKTALTLLrgNENRFDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMMSVNDDPKMVMKG 109
                         799********************.***************555555*******************87754.558****************** PP

                         HHTTESEEEESS--HHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelv 108
                         +  Ga d+l Kp+  +e+ 
  Phvul.001G046300.1 110 ITHGACDYLLKPVRLKEVQ 128
                         ************9988865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1581589IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.4E-4218158No hitNo description
SuperFamilySSF521724.13E-3418143IPR011006CheY-like superfamily
SMARTSM004481.5E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.66120135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2321128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.97E-2622134No hitNo description
SuperFamilySSF466891.33E-18201261IPR009057Homeodomain-like
PROSITE profilePS5129410.314201260IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-29202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25204257IPR006447Myb domain, plants
PfamPF002494.8E-7206255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MTVVEDRMDE LRDEFPIGMR VLAVDDDSTC LMILETMLRR CQYHVTTTKN AKTALTLLRG  60
NENRFDLVIS DVQMPDMDGF KLLELVGLEM DLPVIMMSVN DDPKMVMKGI THGACDYLLK  120
PVRLKEVQNI WQHVVRRRTS DSKERSKSSN QDKANTDSNE RGSVATGNSD QNVKSSRKRK  180
DESDYDNDEQ ENGHDNEESS CHKKARVVWT VDLHQKFVNA VDQLGFDKAV PKKILDLMNV  240
EKLTRENVAS HLQKFRLYLK RRSCAVNREA NMAAALGTTD SSFLTMGSLS GVGHLQSLTG  300
AQHFHNNTFR PFGSGGMAGR LNTSFGVNLH GLPTSEILHL GHAHNFHKSI HEPLKFQQAI  360
IGGNQNVIQG MPMSTGLDQF QRKGVNIGVR PIQSISPFLD VQPNFSLSNK LPDLMPKSTM  420
GCSASPVLDV SNNALVLKAD GENTQGGGLI FGQTSLASQN SQFSMPLLDQ GRCSDIWSNT  480
VQSSGTNSYP PTETFQWRNL SGASSITSLS NQSLDSLKDM HSQGVLFANN SGQISNSVVP  540
FQGWDDNNDD SSFPSTIFGN SVDSLIDTDG HTSINSIYNK NTDFSFFELR D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-23200263164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G046300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161146.10.0hypothetical protein PHAVU_001G046300g
SwissprotP625981e-124ARR12_ARATH; Two-component response regulator ARR12
TrEMBLV7CV590.0V7CV59_PHAVU; Two-component response regulator
STRINGXP_007161146.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-119response regulator 12
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Cortleven A, et al.
    A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors.
    Plant Physiol., 2014. 164(3): p. 1470-83
    [PMID:24424319]
  3. Kim HJ,Kieber JJ,Schaller GE
    The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.
    Plant Signal Behav, 2013. 8(12): p. e26434
    [PMID:24675172]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Jiang L, et al.
    Strigolactones spatially influence lateral root development through the cytokinin signaling network.
    J. Exp. Bot., 2016. 67(1): p. 379-89
    [PMID:26519957]
  6. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  7. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Kobayashi K,Iwase A
    Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal.
    Plant Signal Behav, 2017. 12(6): p. e1338999
    [PMID:28594268]
  11. Dai X, et al.
    ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression.
    J Integr Plant Biol, 2017. 59(10): p. 747-758
    [PMID:28681564]
  12. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  13. Yan Z, et al.
    Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1.
    Plant Physiol., 2017. 175(3): p. 1438-1454
    [PMID:28931628]
  14. Bustillo-AvendaƱo E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]