PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G044500.1
Common NamePHAVU_001G044500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 230aa    MW: 25706.2 Da    PI: 4.5392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G044500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-173887255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr +k +g+Wv+eIr p++   r r++lg++ t e+Aa+a +aa  +l+g
  Phvul.001G044500.1 38 VYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYETQEKAARAFDAALYCLRG 87
                        7*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-203896IPR016177DNA-binding domain
PROSITE profilePS5103221.973895IPR001471AP2/ERF domain
PfamPF008472.1E-103887IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-293896IPR001471AP2/ERF domain
SMARTSM003802.6E-2938101IPR001471AP2/ERF domain
PRINTSPR003672.5E-93950IPR001471AP2/ERF domain
CDDcd000181.47E-273997No hitNo description
PRINTSPR003672.5E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKPAITTVD SFSSSSSSSP PASCYDSFST NNSSGCKVYK GVRKRKWGKW VSEIRLPNSR  60
ERIWLGSYET QEKAARAFDA ALYCLRGKAA SFNFPDTPQH MEMAAVEIPC SHQEIQEVAA  120
KFANKEGVLA EEEEARSESK SNDTTDTNTT FPGTNNHAQV DQDTMDWTFM NMLDDLNVSD  180
FGLFGAEKAE FLCPTTQTPL LFHNGDEIEV DDHDHDAFSN HSFLWSWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1539951572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G044500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-99AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161121.11e-173hypothetical protein PHAVU_001G044500g
SwissprotQ84QC22e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLV7CV041e-172V7CV04_PHAVU; Uncharacterized protein
STRINGXP_007161121.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]