PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J755300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 207aa    MW: 23363 Da    PI: 10.4085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J755300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.4e-17112203699
                        ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +++dv+ + +++ l  +fa+ h  ++ +++  +l +   ++We k+ +r + +r +l +GW  Fv++ngL++gD+++F+l+++ e +++v++
  Pavir.J755300.1.p 112 MNADVTYRyHIMELGIRFAAPHL-PH-RGQ-TVLLQCMKKVWETKMVVRSGTRRWFLMGGWATFVRDNGLRVGDICLFELKKKGELTMKVHI 200
                        46666655588899999998883.33.333.56667799*******9988888888889*********************9999999****9 PP

                        E-S CS
                 B3  97 frk 99 
                        +++
  Pavir.J755300.1.p 201 ISR 203
                        987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2197202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-21100204IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-7108204IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252108204IPR003340B3 DNA binding domain
CDDcd100174.12E-18108202No hitNo description
PfamPF023621.0E-14120203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MFTVYLLRAT ATHSRGGTSF QRVGPFHGRS STKMASTVHT KEESSDDNVS SQSDMDEASH  60
KYLKSNSGGP SEAPYIVSSK SCLSRSQKKI VEEKVRAIQS EVPIYVAIMK KMNADVTYRY  120
HIMELGIRFA APHLPHRGQT VLLQCMKKVW ETKMVVRSGT RRWFLMGGWA TFVRDNGLRV  180
GDICLFELKK KGELTMKVHI ISREQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J755300.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.11e-121B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.11e-121B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.11e-121B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.11e-121B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.11e-121B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792776.11e-121B3 domain-containing protein Os03g0619600-like isoform X2
RefseqXP_025792777.11e-121B3 domain-containing protein Os03g0619600-like isoform X2
SwissprotQ6AV224e-56Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2T7C3Q81e-127A0A2T7C3Q8_9POAL; Uncharacterized protein
STRINGPavir.J19009.1.p1e-154(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]