PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.J755300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 207aa MW: 23363 Da PI: 10.4085

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.J755300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.4e-17	112	203	6	99
..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++dv+ + +++ l +fa+ h ++ +++ +l + ++We k+ +r + +r +l +GW Fv++ngL++gD+++F+l+++ e +++v++ Pavir.J755300.1.p 112 MNADVTYRyHIMELGIRFAAPHL-PH-RGQ-TVLLQCMKKVWETKMVVRSGTRRWFLMGGWATFVRDNGLRVGDICLFELKKKGELTMKVHI 200 46666655588899999998883.33.333.56667799*****9988888888889*****************9999999**9 PP E-S CS B3 97 frk 99 +++ Pavir.J755300.1.p 201 ISR 203 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.8E-21	97	202	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.62E-21	100	204	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.4E-7	108	204	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.252	108	204	IPR003340	B3 DNA binding domain
CDD	cd10017	4.12E-18	108	202	No hit	No description
Pfam	PF02362	1.0E-14	120	203	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MFTVYLLRAT ATHSRGGTSF QRVGPFHGRS STKMASTVHT KEESSDDNVS SQSDMDEASH 60 KYLKSNSGGP SEAPYIVSSK SCLSRSQKKI VEEKVRAIQS EVPIYVAIMK KMNADVTYRY 120 HIMELGIRFA APHLPHRGQT VLLQCMKKVW ETKMVVRSGT RRWFLMGGWA TFVRDNGLRV 180 GDICLFELKK KGELTMKVHI ISREQF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.J755300.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792770.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792772.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792773.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792774.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792775.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X1
Refseq	XP_025792776.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X2
Refseq	XP_025792777.1	1e-121	B3 domain-containing protein Os03g0619600-like isoform X2
Swissprot	Q6AV22	4e-56	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A2T7C3Q8	1e-127	A0A2T7C3Q8_9POAL; Uncharacterized protein
STRING	Pavir.J19009.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-08	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.J755300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]