PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J375600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 283aa    MW: 29798.5 Da    PI: 8.3561
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J375600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.45.8e-232066450
             RWP-RK  4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50
                       ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ 
  Pavir.J375600.1.p 20 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 66
                       6899*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.529388IPR003035RWP-RK domain
PfamPF020424.4E-212166IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MASNAPAPQP QALPKPTRVS LSYEEISKLF SLPIAEAASI LGVCTSVLKR ICRSHGIVRW  60
PYRKLVSGKA GDDTKGPERE KAKELLELSK IAKQKAFSPS GSSVASTNTS QGVAKSQQGS  120
SKAGQVSVSP PAVKQNASVS LAHGSQAKAI PSYMDDFKYG FPSSGLSCET KKWWGGSSDS  180
DCAPTKDGSC EALGEASKGM TDDDELDWGA DEAEAEADGA VTAEASAQLC SLRRKAVDDG  240
RKLLNGDTRR GQDFSRLNKR QKLALAQVFG ASLPDVVLVF SE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.166630.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J375600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793833.10.0protein NLP7-like
TrEMBLA0A2T8I1220.0A0A2T8I122_9POAL; Uncharacterized protein
STRINGPavir.J04809.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67053242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.11e-10RWP-RK domain-containing protein