PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J196200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 244aa    MW: 27599.9 Da    PI: 6.9497
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J196200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17391181297
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         ++ +++p++f++++ gk   s t++le+++g++++v++  + + ++++++ GW+ Fv+a++++e+D+++F+ +++s f   v+++
  Pavir.J196200.1.p  39 PKHGMIVPNRFVKHFAGK--LSGTVKLESPNGNRYDVEV--TEHHNKMMFRHGWEAFVDAHHIEENDSLLFRNIETSVF--EVMIL 118
                        45789*******888877..677****************..*******************************8877888..66665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-2126123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2228127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.78828121IPR003340B3 DNA binding domain
CDDcd100172.62E-1930119No hitNo description
SMARTSM010195.4E-931121IPR003340B3 DNA binding domain
PfamPF023623.6E-1639118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSGGSRMKKP REHCQRYLDR LDEKNKTMSC FLRHMTANPK HGMIVPNRFV KHFAGKLSGT  60
VKLESPNGNR YDVEVTEHHN KMMFRHGWEA FVDAHHIEEN DSLLFRNIET SVFEVMILDS  120
DGCEKMFRCS GRKNTQSVGE RSVHFVDISS SSQHGTIESS GNERVARFVK GSSSRRGKTS  180
KMDVTSSSSG GSGEDIPCEE ESFESDDLQK PPGADYIISC RSHLSEEQKE RVIALIEELE  240
PKIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J196200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685402.11e-123B3 domain-containing protein Os03g0620400
SwissprotQ851W54e-68Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A368SHL41e-117A0A368SHL4_SETIT; Uncharacterized protein
STRINGPavir.J14972.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]