PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J169400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 285aa    MW: 29230.5 Da    PI: 4.4044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J169400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184394156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Pavir.J169400.1.p 43 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 94
                       5799******.**********843...4*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-2843101No hitNo description
Gene3DG3DSA:3.30.730.109.5E-2944101IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2144101IPR016177DNA-binding domain
PROSITE profilePS5103221.56244101IPR001471AP2/ERF domain
SMARTSM003803.4E-3244107IPR001471AP2/ERF domain
PfamPF008471.0E-104493IPR001471AP2/ERF domain
PRINTSPR003671.6E-84556IPR001471AP2/ERF domain
PRINTSPR003671.6E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSSSSADK KSSSSSSKRR QQPQAPQPDA NTTRYLGVRR RPWGRYAAEI  60
RDPATKERHW LGTFDTAEEA AVAYDRAARS LRGARARTNF AFPDLPPGSS VTPYLSPDLT  120
SGDNAGQLLQ PFYADPAAAS LPAAAHAASG GGGGAGYGAA GDYASYGGGY SAEDMSALMD  180
DLAIPDDLPA DDYYGVNAGG AMDQLSSVYG GVASNASAAA GGWCDSSEFS AYGGAPSAAA  240
AAASHGVYFE EGYVHSPLFS PMPAADDACA DGFQLGGSSS SYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1845100662ATERF1
3gcc_A5e-1845100662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.279331e-33root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J169400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-128ethylene-responsive transcription factor LEP
TrEMBLK3YEC41e-126K3YEC4_SETIT; Uncharacterized protein
STRINGPavir.J16868.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-23ERF family protein