PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J066900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 529aa    MW: 57700.7 Da    PI: 5.2413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J066900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.2e-06279300223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  Pavir.J066900.1.p 279 FCLICGKGFKRDANLRMHMRGH 300
                        5*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-5276304No hitNo description
PROSITE profilePS5015711.552278305IPR007087Zinc finger, C2H2
SMARTSM003550.012278300IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-5280304IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SMARTSM0035585327360IPR015880Zinc finger, C2H2-like
SMARTSM0035522365387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEGGMSSLET AMKASSSVAS GTATNADPDQ QTVRSNSVEQ FYFPRPGQSL PGIPPFFGPL  60
SSSLYLPNDN EAKVGNQFEP NPSQNTDWDP QAIVSNLTFL EQKIKQVKDV VQSMSNRENQ  120
VAGGSCELAA KQQLITADLT SIVIQLITTA GSLLPSMKNP LSSNPAVRQL SNTLGSPMGF  180
GMIANQRPSV DSKTDIPDIG KASGYEELIN SLNTTQDERD DLIKCPNPCG GEGSEPTPME  240
DLDVKESDDG EHEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH  300
GDEYKTAAAL AKPTKDSGSD HAPVTRYSCP FVGCKRNKEH KKFQPLETIL CVKNHYKRSH  360
CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA  420
LPMDDVKVSE ASEQQQDSEP MNEISRSMGC FPCSSSDGIS NLDMKMATPL LDPPLKMADD  480
ARGYYSPLSF DPCFGALDDF TRPGFDISED PFAFLPSGCG YVHQNGDN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.69820.0callus| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J066900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847340.0KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence.
GenBankKF1849410.0KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819567.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6RHU50.0A0A3L6RHU5_PANMI; Uncharacterized protein
STRINGPavir.J14096.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-153C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]