PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J029200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 209aa    MW: 22276.9 Da    PI: 5.642
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J029200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS160.61.3e-491181193373
               GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283
                        +L+vk+gE +aVn+vl+ hrll++++  +    ++L l +s+ + ++ + e+e  +ns+ + +rf++al++y+a fd++ +a+lp +s +r+
  Pavir.J029200.1.p   1 MLHVKRGERVAVNCVLAAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGGWEARFARALRFYAAAFDAVdAAGLPDASPARV 90 
                        79********************87777666..89*********************************************9999********* PP

               GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaW 373
                        k E++ ++rei+n+va e a+r+erhe+++ Wr+r+ee GF+++ l++++++qa+++ r+++   y+v+ +   + l+l W d+p+++vSaW
  Pavir.J029200.1.p  91 KAEEM-FAREICNAVAFEDADRFERHESFAGWRRRMEEGGFQNAGLGDREVMQARMIARMFAPGNYSVQAQgnGEGLTLRWLDQPMYTVSAW 181
                        *****.********************************************************555***9664355677************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.6021160IPR005202Transcription factor GRAS
PfamPF035144.5E-471181IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLHVKRGERV AVNCVLAAHR LLRDDTGAAL ADFLGLARST GAAILLLGEH EDALNSGGWE  60
ARFARALRFY AAAFDAVDAA GLPDASPARV KAEEMFAREI CNAVAFEDAD RFERHESFAG  120
WRRRMEEGGF QNAGLGDREV MQARMIARMF APGNYSVQAQ GNGEGLTLRW LDQPMYTVSA  180
WAPVGDGGGG GSTVSASVST TASHSQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-204181197374GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180180.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698760.0BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436390.11e-113hypothetical protein SORBIDRAFT_10g001690
TrEMBLA0A0A9GGP81e-128A0A0A9GGP8_ARUDO; Uncharacterized protein
STRINGSb10g001690.11e-112(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-36GRAS family protein