PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG557400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 372aa    MW: 39957 Da    PI: 6.5321
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG557400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.37e-3158163297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.......aksgkepsfs 81 
                          lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K+++++k        +  g  ++f+
  Pavir.9NG557400.1.p  58 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCRKYrncverlRVAGAAFTFR 147
                          79*************************8867778**********************************9999867776666789999*** PP

               DUF573  82 kehdqkifelskkiWg 97 
                          ++h+q ife+++ iW+
  Pavir.9NG557400.1.p 148 SPHEQAIFEIARTIWR 163
                          ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.1E-2859162IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SVSAAPPPGA GAGERRPLFQ  60
RLWTDEDEIV ILRAFAEFTA QRGTSFASHQ YDTTPFYEDM RRRLHTGFTK NQLVEKIRRL  120
KRKYRNCRKY RNCVERLRVA GAAFTFRSPH EQAIFEIART IWRPDSDKHG RDSDDEAAAN  180
AHDGPLALDA NGESTKSPTS RPRRGGRRRR TGDFPADADA ETLALPPPPP MPVMAEDALP  240
SFPAAGMPAM DAGVGVGSIS IDPSAGLPAA MSAAAAAVTG GSTAENPILS ALFKEMVRAM  300
LSIGGGVTAA PLGLEPPPAI AGMPMEGEKW RQQRIRELEV YLRRIDLLQD QARAALEELR  360
SAPAARGGMN T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG557400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.10.0probable transcription factor At3g04930
TrEMBLA0A2T7CC960.0A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R30.0A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGPavir.J23796.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-22DNA-binding storekeeper protein-related transcriptional regulator