PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG212400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 310aa    MW: 34732.7 Da    PI: 9.1284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG212400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000351030323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+ksF++  +L  H+++H
  Pavir.9NG212400.1.p 10 CKVCKKSFPSYNSLGGHMNLH 30
                         *******************99 PP

2zf-C2H212.90.0003484105223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ C ++F + + L +H+r H
  Pavir.9NG212400.1.p  84 ECQLCFRVFASCHALSVHMRAH 105
                          5*******************99 PP

3zf-C2H216.91.8e-05215237123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk+F+++  L +H + H
  Pavir.9NG212400.1.p 215 HDCKLCGKVFTSSKGLASHKKFH 237
                          56******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.74E-7630No hitNo description
PROSITE profilePS501579.785835IPR007087Zinc finger, C2H2
SMARTSM003551.7830IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-9831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576677.74E-778105No hitNo description
PROSITE profilePS501579.53683110IPR007087Zinc finger, C2H2
SMARTSM003554.283105IPR015880Zinc finger, C2H2-like
PfamPF138945.4E-484105No hitNo description
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SuperFamilySSF576678.59E-5214238No hitNo description
SMARTSM003550.033215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845215237IPR007087Zinc finger, C2H2
PfamPF139120.0053215237IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-4215237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MPPRGRKHWC KVCKKSFPSY NSLGGHMNLH RVKRKQKNQA RSTLSLPNIG DGPGGYGLRE  60
RRHSTWLLCD SSDDEYLTMV PKNECQLCFR VFASCHALSV HMRAHARHER KMVAKDVVVS  120
TPVMLTYGME EVNAARVLLM ISGYSGMDSA SEHCDEDYEM GGNSAYCVQK SEMELDYSCH  180
GKTGDAELMM PESPSSDVKP KFISLSQVLK VTESHDCKLC GKVFTSSKGL ASHKKFHKVP  240
DHEKVAASPN SEISQTGQQL LEVDSRLLRL NLNLPGFSDR NYRSRSAKSA QTPWWTTRAF  300
RSERMLGVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG212400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.10.0uncharacterized protein LOC112876858
RefseqXP_025796824.10.0uncharacterized protein LOC112876858
TrEMBLA0A2S3IK940.0A0A2S3IK94_9POAL; Uncharacterized protein
STRINGPavir.J08570.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.14e-08C2H2 family protein