PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG206200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 190aa    MW: 21653.1 Da    PI: 10.191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG206200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.2e-10591241884
                          --HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3  18 lpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          ++k++a  h   +++s+ +tl+++s   +W  k+  r+ s++ +l + W +Fv++n+++egD++++  
  Pavir.9NG206200.1.p  59 ISKDYAFPHF--PHRSTNVTLQTPSKrSEWHPKFYKRNASRKNMLMGQWLDFVRDNRVQEGDICLLFP 124
                          6666665554..568899*****777488*****77999999**********************8763 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-1633140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1634140IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.006441141IPR003340B3 DNA binding domain
CDDcd100178.11E-1541136No hitNo description
PROSITE profilePS5086310.05242141IPR003340B3 DNA binding domain
PfamPF023621.4E-859133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MIFRHPQKAD YVLSYRSILS EAQKERVIAF IQEIQPKITV FVAVMQKRNI QPPGPFLGIS  60
KDYAFPHFPH RSTNVTLQTP SKRSEWHPKF YKRNASRKNM LMGQWLDFVR DNRVQEGDIC  120
LLFPAEGGKR YTYTVYLLCA SATHSIGRAG FQIVCPCPGR SSAKMASEVH IMEEPTNGIR  180
NIFTNLVGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG206200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-115B3 domain-containing protein Os03g0619800-like isoform X3
RefseqXP_025797621.11e-115B3 domain-containing protein Os03g0619600-like isoform X4
SwissprotQ6AV213e-56Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A2T7C3Q01e-116A0A2T7C3Q0_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3Q41e-116A0A2T7C3Q4_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172