PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v5.0

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG206000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 820aa MW: 91465.5 Da PI: 8.6725

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG206000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.3	1.5e-14	749	816	30	99
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++tl+l+ g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++++ ++ v ++rk Pavir.9NG206000.1.p 749 PTKGQTLVLQ-CGGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKKEKLTMAVYIIRK 816 3456566655.499*****99888877.5899******************99*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	8.6E-6	3	55	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	9.75E-6	3	54	IPR011011	Zinc finger, FYVE/PHD-type
PROSITE pattern	PS01359	0	5	50	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:2.40.330.10	2.3E-14	516	623	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-14	517	622	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.026	524	624	IPR003340	B3 DNA binding domain
CDD	cd10017	1.99E-14	524	621	No hit	No description
PROSITE profile	PS50863	10.941	525	624	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.2E-19	712	816	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.1E-17	713	816	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.68E-16	718	815	No hit	No description
SMART	SM01019	8.4E-6	720	817	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-12	748	816	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.506	761	817	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MNIVCEVCGD IGFRHILLCC RDCKCSAVHQ YCLEKVVFDA SLLEWFCYEC LQKRSEITCV 60 RSVEKVPSER PPSHAHFGSI VHQPISKRVE STRDSGAWKN RKSKSFVTIY ASLNKKYPSQ 120 KKRTKNKSNM RPMGNCTNRG RIDKISAHTS AKASYSCEII ETESAKSNNG NNQQVDHENP 180 GTFNIKQPSP LIVNCLGTSG DTDQSHMLET MEELARKSKK TTKIPTAEFK GLVMNRENVV 240 LRSNKLGSSC STAELGNLVL EKSRGKSNSM KDSGGNHDNQ TNQHASVGCK NMEVKSVKDK 300 ETVVAADQNK YGAVGSLRNS MDKSEVHGDS NSNSNSKSNS NIIDGLMPER EKEEIRFQLD 360 YRAKYELPQR SIAANVPQLP TLQNDAVDKV TSYSANDGCE ELFSCRGIKN IPSVRERSVD 420 SVDISSISQH DTTEASESSE SLAEHQKGSS CRHGKTLKKM AAASSSSEES GEDIPSENLS 480 LESDDLRSSL GADYVLSYRT YLSKAQKGRV MKLIKEIQPE FTVYVATMRK TSVQPPGPYL 540 GITKEYALAH FPDKSTSVTL EMPGTSKKWH PKFYKRNESR KNFLMGQWLD FICDNHVQEG 600 DIVLLFPTKG GGRSTFTVYI LHETATHSIG RAGFQRVGSC PGGSTTKMAS EVHIEEEPTT 660 GNHISQESDM HEIPHESLES EDSDPFQPPY FVPCKSPLSK SQKRIVEERV RAIRSEIPLC 720 VAVMKNNNVG VAQRWMLELA SRYGSVYLPT KGQTLVLQCG GKTWEAKMMF HNGRRWFING 780 GWPNFARGNG LRVGDICLFE LKKKEKLTMA VYIIRKEQF*

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MNIVCEVCGD IGFRHILLCC RDCKCSAVHQ YCLEKVVFDA SLLEWFCYEC LQKRSEITCV  60
RSVEKVPSER PPSHAHFGSI VHQPISKRVE STRDSGAWKN RKSKSFVTIY ASLNKKYPSQ  120
KKRTKNKSNM RPMGNCTNRG RIDKISAHTS AKASYSCEII ETESAKSNNG NNQQVDHENP  180
GTFNIKQPSP LIVNCLGTSG DTDQSHMLET MEELARKSKK TTKIPTAEFK GLVMNRENVV  240
LRSNKLGSSC STAELGNLVL EKSRGKSNSM KDSGGNHDNQ TNQHASVGCK NMEVKSVKDK  300
ETVVAADQNK YGAVGSLRNS MDKSEVHGDS NSNSNSKSNS NIIDGLMPER EKEEIRFQLD  360
YRAKYELPQR SIAANVPQLP TLQNDAVDKV TSYSANDGCE ELFSCRGIKN IPSVRERSVD  420
SVDISSISQH DTTEASESSE SLAEHQKGSS CRHGKTLKKM AAASSSSEES GEDIPSENLS  480
LESDDLRSSL GADYVLSYRT YLSKAQKGRV MKLIKEIQPE FTVYVATMRK TSVQPPGPYL  540
GITKEYALAH FPDKSTSVTL EMPGTSKKWH PKFYKRNESR KNFLMGQWLD FICDNHVQEG  600
DIVLLFPTKG GGRSTFTVYI LHETATHSIG RAGFQRVGSC PGGSTTKMAS EVHIEEEPTT  660
GNHISQESDM HEIPHESLES EDSDPFQPPY FVPCKSPLSK SQKRIVEERV RAIRSEIPLC  720
VAVMKNNNVG VAQRWMLELA SRYGSVYLPT KGQTLVLQCG GKTWEAKMMF HNGRRWFING  780
GWPNFARGNG LRVGDICLFE LKKKEKLTMA VYIIRKEQF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.30639	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG206000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797622.1	0.0	B3 domain-containing protein Os03g0619800-like
TrEMBL	A0A2T8I1F4	0.0	A0A2T8I1F4_9POAL; Uncharacterized protein
STRING	Pavir.Ia01276.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	3e-06	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG206000.1.p