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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.9NG206000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 820aa MW: 91465.5 Da PI: 8.6725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.3 | 1.5e-14 | 749 | 816 | 30 | 99 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++tl+l+ g++We k+ + +++++ ++ +GW +F++ ngL++gD+++F+l+++++ ++ v ++rk Pavir.9NG206000.1.p 749 PTKGQTLVLQ-CGGKTWEAKMMFHNGRRW-FINGGWPNFARGNGLRVGDICLFELKKKEKLTMAVYIIRK 816 3456566655.499*******99888877.5899**********************99*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 8.6E-6 | 3 | 55 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 9.75E-6 | 3 | 54 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 5 | 50 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 2.3E-14 | 516 | 623 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-14 | 517 | 622 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.026 | 524 | 624 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.99E-14 | 524 | 621 | No hit | No description |
PROSITE profile | PS50863 | 10.941 | 525 | 624 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-19 | 712 | 816 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-17 | 713 | 816 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-16 | 718 | 815 | No hit | No description |
SMART | SM01019 | 8.4E-6 | 720 | 817 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-12 | 748 | 816 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.506 | 761 | 817 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MNIVCEVCGD IGFRHILLCC RDCKCSAVHQ YCLEKVVFDA SLLEWFCYEC LQKRSEITCV 60 RSVEKVPSER PPSHAHFGSI VHQPISKRVE STRDSGAWKN RKSKSFVTIY ASLNKKYPSQ 120 KKRTKNKSNM RPMGNCTNRG RIDKISAHTS AKASYSCEII ETESAKSNNG NNQQVDHENP 180 GTFNIKQPSP LIVNCLGTSG DTDQSHMLET MEELARKSKK TTKIPTAEFK GLVMNRENVV 240 LRSNKLGSSC STAELGNLVL EKSRGKSNSM KDSGGNHDNQ TNQHASVGCK NMEVKSVKDK 300 ETVVAADQNK YGAVGSLRNS MDKSEVHGDS NSNSNSKSNS NIIDGLMPER EKEEIRFQLD 360 YRAKYELPQR SIAANVPQLP TLQNDAVDKV TSYSANDGCE ELFSCRGIKN IPSVRERSVD 420 SVDISSISQH DTTEASESSE SLAEHQKGSS CRHGKTLKKM AAASSSSEES GEDIPSENLS 480 LESDDLRSSL GADYVLSYRT YLSKAQKGRV MKLIKEIQPE FTVYVATMRK TSVQPPGPYL 540 GITKEYALAH FPDKSTSVTL EMPGTSKKWH PKFYKRNESR KNFLMGQWLD FICDNHVQEG 600 DIVLLFPTKG GGRSTFTVYI LHETATHSIG RAGFQRVGSC PGGSTTKMAS EVHIEEEPTT 660 GNHISQESDM HEIPHESLES EDSDPFQPPY FVPCKSPLSK SQKRIVEERV RAIRSEIPLC 720 VAVMKNNNVG VAQRWMLELA SRYGSVYLPT KGQTLVLQCG GKTWEAKMMF HNGRRWFING 780 GWPNFARGNG LRVGDICLFE LKKKEKLTMA VYIIRKEQF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.30639 | 0.0 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.9NG206000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797622.1 | 0.0 | B3 domain-containing protein Os03g0619800-like | ||||
TrEMBL | A0A2T8I1F4 | 0.0 | A0A2T8I1F4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01276.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.9NG206000.1.p |