PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG205300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 171aa    MW: 19306.2 Da    PI: 7.5013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG205300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-1534117998
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +++ ++ +++p + ++ + g+   s  + +e+++g+++ vk+   k++g++vl+ GW+ F +a+++ke+D+++F+++++s+f  +v +++
  Pavir.9NG205300.1.p  34 SANYRRSMTIPDRVMNLFRGE--LSESIEIESPDGNVYGVKV--IKHKGKIVLQCGWEVFIDAHHIKENDSLLFQHIENSRF--KVLILD 117
                          44555679******9777666..6678***************..9********************************99999..777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2022121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-1925121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.64626119IPR003340B3 DNA binding domain
SMARTSM010194.2E-928119IPR003340B3 DNA binding domain
CDDcd100172.60E-1530117No hitNo description
PfamPF023623.5E-1433117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSGHSSQMKK SCVCCQRYMD HLDGKMKCFL SHMSANYRRS MTIPDRVMNL FRGELSESIE  60
IESPDGNVYG VKVIKHKGKI VLQCGWEVFI DAHHIKENDS LLFQHIENSR FKVLILDSDG  120
CEKVFSCSGI KITTNAQERE AEYVDISDTA HDYTKKLSGT KDQPVVKGLL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG205300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791593.11e-102B3 domain-containing protein Os03g0620400-like
SwissprotQ851W55e-67Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A2T7C3P11e-105A0A2T7C3P1_9POAL; Uncharacterized protein
STRINGPavir.Ia01274.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-12B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]