PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG205200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 346aa    MW: 39566.5 Da    PI: 10.1127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG205200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.4e-17441424100
                          E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
                   B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                          +++ps+v ++   lv+p+++a +h  +k++   ++l+   ++++W  k+ +rk + ++++ + W++Fv++n+++egD+++F+ + +  ++
  Pavir.9NG205200.1.p  44 IMKPSNVKSQyPYLVIPNDYAVAHFPDKNQ--FVKLQRpGKNKKWHPKFYIRKDRAAHMFVGHWSDFVHDNHVREGDICIFQPMkNAgTK 131
                          57777777776679**********766555..5899884566*******77999999*************************66255899 PP

                          E..EEEEE-SS CS
                   B3  90 felvvkvfrks 100
                          f+++v+++rks
  Pavir.9NG205200.1.p 132 FTMTVHLIRKS 142
                          99***999985 PP

2B353.44.7e-172563441199
                          HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +++++l + k++a+e+  +g   e +tltl    ++  W+v++   +++s + +lt GW++Fv++n+L++ D+++F+ +++++ +++v +
  Pavir.9NG205200.1.p 256 NSTCILAFGKQYATEYlpDG---E-QTLTLLRkGKNTIWKVRMVPrSGSSHGQMLTVGWRDFVQENRLEVEDICLFQQMDDKRLTMTVDI 341
                          467999999*******5432...2.3555555277799*****654555555*************************9999********* PP

                          E-S CS
                   B3  97 frk 99 
                          +r+
  Pavir.9NG205200.1.p 342 IRH 344
                          996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-2134142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2036143IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1941137No hitNo description
SMARTSM010191.2E-1041142IPR003340B3 DNA binding domain
PROSITE profilePS5086311.39242142IPR003340B3 DNA binding domain
PfamPF023621.4E-1542141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-19234339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17237343IPR015300DNA-binding pseudobarrel domain
CDDcd100172.11E-14242343No hitNo description
SMARTSM010194.2E-7244345IPR003340B3 DNA binding domain
PROSITE profilePS5086310.673246345IPR003340B3 DNA binding domain
PfamPF023622.5E-15256344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MILKTNPEPD YVLSRLSNLS AEQEEKVEEL INEIRPEIRV YVAIMKPSNV KSQYPYLVIP  60
NDYAVAHFPD KNQFVKLQRP GKNKKWHPKF YIRKDRAAHM FVGHWSDFVH DNHVREGDIC  120
IFQPMKNAGT KFTMTVHLIR KSKVDMLDEN RNCPGGVSSS RGRMSKKVND HKTVSSSDGR  180
PTAKVTLKIR VKEEPPHQGP LESDDSGQPS KYPYILSGRA HLNGEQKKKV KEIVRSIQSR  240
VPIYVAILNK SNVGINSTCI LAFGKQYATE YLPDGEQTLT LLRKGKNTIW KVRMVPRSGS  300
SHGQMLTVGW RDFVQENRLE VEDICLFQQM DDKRLTMTVD IIRHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170880.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG205200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628609.11e-102B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_015628610.11e-102B3 domain-containing protein Os03g0620400 isoform X2
RefseqXP_015628611.11e-102B3 domain-containing protein Os03g0620400 isoform X2
SwissprotQ851W51e-103Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A3L6TV981e-179A0A3L6TV98_PANMI; Uncharacterized protein
STRINGPavir.Ia01274.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-10B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]